I aimed to open multiple files (one by one, using for loop in bash terminal) and modify it using PLINK (a programme) and later on, python function. Following are the codes:
for i in {1..10}; do
plink --cow --noweb --lfile $i --extract extract1.snp --recode --out 1$i
python -c 'import file_convert;file_convert.convert_tree_mix("1$i.map","tmp$i")'
done
But, as expected, python could not read and could not open "11.map", it did not replace "$i" with 1. How can i modify the code so that python function, in combination with for loop, open different file each time based on the value of "i"
You need to include the whole python code inside double quotes, so that the $1 inside the python code will expand. $1 in shell refers to the first parameter.
python -c "import file_convert;file_convert.convert_tree_mix(\"1$i.map\",\"tmp$i\")"
この記事はインターネットから収集されたものであり、転載の際にはソースを示してください。
侵害の場合は、連絡してください[email protected]
コメントを追加