python：多列pandas数据文件

debugcn 发表于 Dev

狐狸大师

我正在编写一个 Python 脚本，它在 N .SDF 填充上循环，使用 glob 创建它们的列表，对每个文件执行一些计算，然后将此信息存储在 Pandas 数据文件格式中。假设我计算了每个文件的 4 个不同属性，对于 1000 次填充，预期输出应以 5 列 1000 行的数据文件格式进行汇总。以下是代码示例：

  # make a list of all .sdf filles present in data folder:
dirlist = [os.path.basename(p) for p in glob.glob('data' + '/*.sdf')]

# create empty data file with 5 columns:
# name of the file,  value of variable p, value of ac, value of don, value of wt
df = pd.DataFrame(columns=["key", "p", "ac", "don", "wt"])

# for each sdf file get its name and calculate 4 different properties: p, ac, don, wt
for sdf in dirlist:
        sdf_name=sdf.rsplit( ".", 1 )[ 0 ]
        # set a name of the file
        key = f'{sdf_name}'
        mol = open(sdf,'rb')
        # --- do some specific calculations --
        p = MolLogP(mol) # coeff conc-perm
        ac = CalcNumLipinskiHBA(mol)#
        don = CalcNumLipinskiHBD(mol)
        wt = MolWt(mol)
        # add one line to DF in the following order : ["key", "p", "ac", "don", "wt"]
        df[key] = [p, ac, don, wt]

问题出在脚本的最后一行，需要在一行中汇总所有计算并将其与处理过的文件一起附加到 DF 中。最终，对于 1000 个处理过的 SDF 填充，我的 DF 应该包含 5 列和 1000 行。

亚历克斯_158

# make a list of all .sdf filles present in data folder:
dirlist = [os.path.basename(p) for p in glob.glob('data' + '/*.sdf')]

# create empty data file with 5 columns:
# name of the file,  value of variable p, value of ac, value of don, value of wt

# for each sdf file get its name and calculate 4 different properties: p, ac, don, wt

holder = []
for sdf in dirlist:
        sdf_name=sdf.rsplit( ".", 1 )[ 0 ]
        # set a name of the file
        key = f'{sdf_name}'
        mol = open(sdf,'rb')
        # --- do some specific calculations --
        p = MolLogP(mol) # coeff conc-perm
        ac = CalcNumLipinskiHBA(mol)#
        don = CalcNumLipinskiHBD(mol)
        wt = MolWt(mol)
        # add one line to DF in the following order : ["key", "p", "ac", "don", "wt"]
        output_list = pd.Series([key, p, ac, don, wt])
        holder.append(output_list)

df = pd.concat(holder, axis = 1)
df.rename(columns={0:"key", 1:"p", 2:"ac", 3:"don", 4:"wt"], inplace = True)
print(df)

本文收集自互联网，转载请注明来源。

如有侵权，请联系[email protected] 删除。