我有两个数据框(df和df1),如下所示
df = pd.DataFrame({'person_id': [101,101,101,101,202,202,202],
'start_date':['5/7/2013 09:27:00 AM','09/08/2013 11:21:00 AM','06/06/2014 08:00:00 AM', '06/06/2014 05:00:00 AM','12/11/2011 10:00:00 AM','13/10/2012 12:00:00 AM','13/12/2012 11:45:00 AM']})
df.start_date = pd.to_datetime(df.start_date)
df['end_date'] = df.start_date + timedelta(days=5)
df['enc_id'] = ['ABC1','ABC2','ABC3','ABC4','DEF1','DEF2','DEF3']
df1 = pd.DataFrame({'person_id': [101,101,101,101,101,101,101,202,202,202,202,202,202,202,202],'date_1':['07/07/2013 11:20:00 AM','05/07/2013 02:30:00 PM','06/07/2013 02:40:00 PM','08/06/2014 12:00:00 AM','11/06/2014 12:00:00 AM','02/03/2013 12:30:00 PM','13/06/2014 12:00:00 AM','12/11/2011 12:00:00 AM','13/10/2012 07:00:00 AM','13/12/2015 12:00:00 AM','13/12/2012 12:00:00 AM','13/12/2012 06:30:00 PM','13/07/2011 10:00:00 AM','18/12/2012 10:00:00 AM', '19/12/2013 11:00:00 AM']})
df1['date_1'] = pd.to_datetime(df1['date_1'])
df1['within_id'] = ['ABC','ABC','ABC','ABC','ABC','ABC','ABC','DEF','DEF','DEF','DEF','DEF','DEF','DEF',np.nan]
我想做的是
a)从df1
“ within_id”列中选择不具有NA的每个人,并检查他们date_1
是否在(df.start_date - 1) and (
同一个人的df.end_date +1)之间,df
以及相同within_id
或相同enc_id
例如:对于subject = 101和within_id
= ABC
,我们有date_1
is 7/7/2013
,请检查它们是否在4/7/2013
(df.start_date - 1
)和11/7/2013
(df.end_date + 1
)之间。
由于第一行比较本身就为我们提供了结果,因此我们无需将其date_1
与df中的其他记录进行比较subject 101
。如果不是,我们需要查找/扫描,直到找到date_1
落入的间隔。
b)如果找到日期间隔,则将对应的enc_id
from分配df
给within_id
indf1
c)如果没有,则分配“超出范围”
我尝试了以下
t1 = df.groupby('person_id').apply(pd.DataFrame.sort_values, 'start_date')
t2 = df1.groupby('person_id').apply(pd.DataFrame.sort_values, 'date_1')
t3= pd.concat([t1, t2], axis=1)
t3['within_id'] = np.where((t3['date_1'] >= t3['start_date'] && t3['person_id'] == t3['person_id_x'] && t3['date_2'] >= t3['end_date']),enc_id]
我希望我的输出(也请参见屏幕快照底部的第14行)如下所示。由于我打算将该解决方案应用于大数据(4/5百万条记录,并且可能有5000-6000个唯一的person_id),因此任何有效且优雅的解决方案都将有所帮助
14 202 2012-12-13 11:00:00 NA
让我们做:
d = df1.merge(df.assign(within_id=df['enc_id'].str[:3]),
on=['person_id', 'within_id'], how='left', indicator=True)
m = d['date_1'].between(d['start_date'] - pd.Timedelta(days=1),
d['end_date'] + pd.Timedelta(days=1))
d = df1.merge(d[m | d['_merge'].ne('both')], on=['person_id', 'date_1'], how='left')
d['within_id'] = d['enc_id'].fillna('out of range').mask(d['_merge'].eq('left_only'))
d = d[df1.columns]
左merge
数据帧df1
与df
上person_id
和within_id
:
print(d)
person_id date_1 within_id start_date end_date enc_id _merge
0 101 2013-07-07 11:20:00 ABC 2013-05-07 09:27:00 2013-05-12 09:27:00 ABC1 both
1 101 2013-07-07 11:20:00 ABC 2013-09-08 11:21:00 2013-09-13 11:21:00 ABC2 both
2 101 2013-07-07 11:20:00 ABC 2014-06-06 08:00:00 2014-06-11 08:00:00 ABC3 both
3 101 2013-07-07 11:20:00 ABC 2014-06-06 05:00:00 2014-06-11 10:00:00 DEF1 both
....
47 202 2012-12-18 10:00:00 DEF 2012-10-13 00:00:00 2012-10-18 00:00:00 DEF2 both
48 202 2012-12-18 10:00:00 DEF 2012-12-13 11:45:00 2012-12-18 11:45:00 DEF3 both
49 202 2013-12-19 11:00:00 NaN NaT NaT NaN left_only
创建一个布尔蒙版m
来表示date_1
介于df.start_date - 1 days
和之间的条件df.end_date + 1 days
:
print(m)
0 False
1 False
2 False
3 False
...
47 False
48 True
49 False
dtype: bool
再次merge
将数据df1
框保留为已使用m
列person_id
和上的掩码过滤的数据框date_1
:
print(d)
person_id date_1 within_id_x within_id_y start_date end_date enc_id _merge
0 101 2013-07-07 11:20:00 ABC NaN NaT NaT NaN NaN
1 101 2013-05-07 14:30:00 ABC ABC 2013-05-07 09:27:00 2013-05-12 09:27:00 ABC1 both
2 101 2013-06-07 14:40:00 ABC NaN NaT NaT NaN NaN
3 101 2014-08-06 00:00:00 ABC NaN NaT NaT NaN NaN
4 101 2014-11-06 00:00:00 ABC NaN NaT NaT NaN NaN
5 101 2013-02-03 12:30:00 ABC NaN NaT NaT NaN NaN
6 101 2014-06-13 00:00:00 ABC NaN NaT NaT NaN NaN
7 202 2011-12-11 00:00:00 DEF DEF 2011-12-11 10:00:00 2011-12-16 10:00:00 DEF1 both
8 202 2012-10-13 07:00:00 DEF DEF 2012-10-13 00:00:00 2012-10-18 00:00:00 DEF2 both
9 202 2015-12-13 00:00:00 DEF NaN NaT NaT NaN NaN
10 202 2012-12-13 00:00:00 DEF DEF 2012-12-13 11:45:00 2012-12-18 11:45:00 DEF3 both
11 202 2012-12-13 18:30:00 DEF DEF 2012-12-13 11:45:00 2012-12-18 11:45:00 DEF3 both
12 202 2011-07-13 10:00:00 DEF NaN NaT NaT NaN NaN
13 202 2012-12-18 10:00:00 DEF DEF 2012-12-13 11:45:00 2012-12-18 11:45:00 DEF3 both
14 202 2013-12-19 11:00:00 NaN NaN NaT NaT NaN left_only
填充中的值within_id
从柱enc_id
和使用Series.fillna
填充的NaN
排除不从符合的那些df
用out of range
,最后筛选列,得到的结果:
print(d)
person_id date_1 within_id
0 101 2013-07-07 11:20:00 out of range
1 101 2013-05-07 14:30:00 ABC1
2 101 2013-06-07 14:40:00 out of range
3 101 2014-08-06 00:00:00 out of range
4 101 2014-11-06 00:00:00 out of range
5 101 2013-02-03 12:30:00 out of range
6 101 2014-06-13 00:00:00 out of range
7 202 2011-12-11 00:00:00 DEF1
8 202 2012-10-13 07:00:00 DEF2
9 202 2015-12-13 00:00:00 out of range
10 202 2012-12-13 00:00:00 DEF3
11 202 2012-12-13 18:30:00 DEF3
12 202 2011-07-13 10:00:00 out of range
13 202 2012-12-18 10:00:00 DEF3
14 202 2013-12-19 11:00:00 NaN
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